The source files are NxN weighted adjacency matrix of the PSI network.<\/p>\n
N is the number of nodes in the network (N=192).<\/p>\n
Each element i and j indicates the energy transfer value from column\/chromophore i to row\/chromophore j.<\/p>\n
The PSI network is weighted and directed.<\/p>\n
Each matrix file represents the PSI network at a specific cutoff distance (CD).<\/p>\n
Here below the identities of the nodes\/chromophores<\/p>\n
P700: reaction center special chlorophyll pair associated to the PSI.
\nRED: red-shifted form of chlorophylls a, concentrated in the LHCI complex.
\nCLA: chlorophyll a molecules that do not belong to P700 or RED (PDB Ligand ID: CLA).
\nCHL: chlorophyll b molecules (PDB Ligand ID: CHL).
\nBCR: \u03b2-carotene
\nZEX: \u03b2-carotene and derivated molecules
\nLUT: Lutein
\nXAT: Violaxanthin<\/p>\n
####################################################
\n## NODES\/CHROMOPHORES ID<\/p>\n
Matrix_index Resname PDB_index
\n1 CHL 25833
\n2 CHL 26261
\n3 CHL 26900
\n4 CHL 26947
\n5 CHL 27050
\n6 CHL 27096
\n7 CHL 27348
\n8 CHL 28059
\n9 CHL 28907
\n10 CHL 28954
\n11 CHL 29070
\n12 CHL 29131
\n13 CLA 25395
\n14 CLA 25460
\n15 CLA 25506
\n16 CLA 25561
\n17 CLA 25691
\n18 CLA 25741
\n19 CLA 25787
\n20 CLA 25880
\n21 CLA 26006
\n22 CLA 26051
\n23 CLA 26443
\n24 CLA 26503
\n25 CLA 26555
\n26 CLA 26620
\n27 CLA 26740
\n28 CLA 26790
\n29 CLA 26850
\n30 CLA 27578
\n31 CLA 27633
\n32 CLA 27685
\n33 CLA 27740
\n34 CLA 27860
\n35 CLA 27910
\n36 CLA 27951
\n37 CLA 27999
\n38 CLA 28156
\n39 CLA 28202
\n40 CLA 28406
\n41 CLA 28466
\n42 CLA 28516
\n43 CLA 28581
\n44 CLA 28701
\n45 CLA 28751
\n46 CLA 28811
\n47 CLA 28857
\n48 CLA 29174
\n49 CLA 29448
\n50 CLA 29513
\n51 CLA 29578
\n52 CLA 29643
\n53 CLA 29708
\n54 CLA 29773
\n55 CLA 29833
\n56 CLA 29898
\n57 CLA 29963
\n58 CLA 30013
\n59 CLA 30078
\n60 CLA 30133
\n61 CLA 30198
\n62 CLA 30263
\n63 CLA 30308
\n64 CLA 30354
\n65 CLA 30419
\n66 CLA 30475
\n67 CLA 30540
\n68 CLA 30590
\n69 CLA 30655
\n70 CLA 30715
\n71 CLA 30775
\n72 CLA 30840
\n73 CLA 30905
\n74 CLA 30960
\n75 CLA 31025
\n76 CLA 31090
\n77 CLA 31155
\n78 CLA 31220
\n79 CLA 31285
\n80 CLA 31350
\n81 CLA 31415
\n82 CLA 31480
\n83 CLA 31535
\n84 CLA 31586
\n85 CLA 31651
\n86 CLA 31716
\n87 CLA 31781
\n88 CLA 31846
\n89 CLA 31911
\n90 CLA 32386
\n91 CLA 32451
\n92 CLA 32702
\n93 CLA 32767
\n94 CLA 32832
\n95 CLA 32897
\n96 CLA 32962
\n97 CLA 33027
\n98 CLA 33092
\n99 CLA 33157
\n100 CLA 33222
\n101 CLA 33282
\n102 CLA 33328
\n103 CLA 33393
\n104 CLA 33458
\n105 CLA 33513
\n106 CLA 33573
\n107 CLA 33638
\n108 CLA 33703
\n109 CLA 33768
\n110 CLA 33814
\n111 CLA 33879
\n112 CLA 33934
\n113 CLA 33999
\n114 CLA 34064
\n115 CLA 34129
\n116 CLA 34194
\n117 CLA 34259
\n118 CLA 34324
\n119 CLA 34389
\n120 CLA 34449
\n121 CLA 34507
\n122 CLA 34567
\n123 CLA 34622
\n124 CLA 34677
\n125 CLA 34742
\n126 CLA 34792
\n127 CLA 34857
\n128 CLA 34922
\n129 CLA 35616
\n130 CLA 35681
\n131 CLA 35869
\n132 CLA 35934
\n133 CLA 35989
\n134 CLA 36035
\n135 CLA 36328
\n136 CLA 36468
\n137 CLA 36533
\n138 CLA 36642
\n139 CLA 36857
\n140 CLA 36902
\n141 CLA 36962
\n142 CLA 36989
\n143 CLA 37056
\n144 CLA 37151
\n145 CLA 37201
\n146 CLA 37261
\n147 LUT 25306
\n148 LUT 25348
\n149 LUT 26331
\n150 LUT 27428
\n151 LUT 27470
\n152 LUT 28334
\n153 LUT 36829
\n154 XAT 26373
\n155 XAT 28376
\n156 BCR 26421
\n157 BCR 27516
\n158 BCR 27556
\n159 BCR 28298
\n160 BCR 32155
\n161 BCR 32195
\n162 BCR 32235
\n163 BCR 32275
\n164 BCR 32315
\n165 BCR 32534
\n166 BCR 32615
\n167 BCR 35244
\n168 BCR 35284
\n169 BCR 35324
\n170 BCR 35364
\n171 BCR 35404
\n172 BCR 35536
\n173 BCR 35847
\n174 BCR 36118
\n175 BCR 36406
\n176 BCR 36446
\n177 BCR 36793
\n178 BCR 37034
\n179 BCR 37129
\n180 BCR 37329
\n181 BCR 37369
\n182 ZEX 35596
\n183 P700 32637
\n184 P700 29383
\n185 RED 25626
\n186 RED 25945
\n187 RED 26685
\n188 RED 26995
\n189 RED 27805
\n190 RED 28106
\n191 RED 28641
\n192 RED 29005<\/p>\n","protected":false},"excerpt":{"rendered":"
The source files are NxN weighted adjacency matrix of the PSI network. N is the number of nodes in the network (N=192). Each element i and j indicates the energy transfer value from column\/chromophore i to row\/chromophore j. The PSI network is weighted and directed. Each matrix file represents the PSI network at a specific […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"http:\/\/www.networks.unipr.it\/wordpress\/index.php\/wp-json\/wp\/v2\/pages\/685"}],"collection":[{"href":"http:\/\/www.networks.unipr.it\/wordpress\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/www.networks.unipr.it\/wordpress\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/www.networks.unipr.it\/wordpress\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.networks.unipr.it\/wordpress\/index.php\/wp-json\/wp\/v2\/comments?post=685"}],"version-history":[{"count":2,"href":"http:\/\/www.networks.unipr.it\/wordpress\/index.php\/wp-json\/wp\/v2\/pages\/685\/revisions"}],"predecessor-version":[{"id":688,"href":"http:\/\/www.networks.unipr.it\/wordpress\/index.php\/wp-json\/wp\/v2\/pages\/685\/revisions\/688"}],"wp:attachment":[{"href":"http:\/\/www.networks.unipr.it\/wordpress\/index.php\/wp-json\/wp\/v2\/media?parent=685"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}